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BIOINFORMATICS, DOCKING & MD
Kuala Lumpur | 3-Day Technical Complete Hands-on Certificate Training in Bioinformatics, Molecular Docking & MD Simulations
Date
3 - 5 February, 2025.
Venue
Concorde Hotel Kuala Lumpur, 2, Jln Sultan Ismail, Kuala Lumpur, 50250.
Fee
| Category | Price |
|---|---|
| Fee for Student (Graduate/Master) | USD 230 |
| Fee for Student (PhD/MBBS) | USD 299 |
| Fee for Research Scholar/TA/LT | USD 345 |
| Fee for PostDoc/Lecturer/Faculty/Professor | USD 391 |
| Fee for Scientist/Company Professional/Doctor(MS/MD) | USD 460 |
BDG LifeSciences is a distinguished bioinformatics company established in 2010 and operates globally. Headquartered in India the company specializes in facilitating workshops, training programs, novel & innovative research projects, and online courses in technologies of bioinformatics & life science. The company is registered under the Ministry of MSME (Micro, Small, and Medium Enterprises), Government of India, with the registration number UDYAM-UP-01-0019151. Recently, BDG Lifesciences, India has authorized BBR Group Pty Ltd., Australia (ACN 608 550 849), to operate its programs in Australia & New Zealand.
With a focus on practical application of technology, where participants work on their own computer/laptop on software/servers, BDG LifeSciences has been a leader in the sector for the last 14 years.
Since its inception, BDG LifeSciences has successfully educated a diverse range of participants globally, including students, scientists, faculty members, professors, and corporate executives.
To view the pictures of our previous events click here-1 and click here-2. To view, the listing of upcoming events kindly click here and our previous workshops can be viewed here. To view the video feedback of our previous events kindly visit our YouTube Channel
After doing several successful events in Malaysia after the COVID-19 pandemic, BDG Lifesciences, India and BBR Pty Ltd. Australia in collaboration with Proinsilico Malaysia has launched a 3-day Complete Hands-on Technical Certificate Training in Bioinformatics, Molecular Docking & MD Simulations as DRUG DISCOVERY MALAYSIA in Kuala Lumpur, Malaysia.
ONLY 20 SEATS | BRING YOUR LAPTOP FOR SOFTWARE INSTALLATION & TRAINING
ACCOMMODATION & FOOD YOU HAVE TO MANAGE ON YOUR OWN
COMPLIMENTARY
- 2 Rounds of Tea/Coffee with snacks for all 3 days
- Lunch for all 3 days
- Workshop Material- Soft copy
- Handouts- Soft copy
- Papers of Technology- Soft copy
- Certificate
SCHEDULE
DAY 1- BASICS AND ADVANCED BIOINFORMATICS
|
TOPIC |
TIME |
|
INTRODUCTION TO BIOINFORMATICS APPLICATIONS OF BIOINFORMATICS DATABASES PRIMARY STRUCTURE ANALYSIS BY PROT SCALE AND TMHMM |
9.30-11.00 |
|
SECONDARY STRUCTURE PREDICTION-CHAU FASMAN TERTIARY STRUCTURE PREDICTION-SPDBV |
11.00-12.00 |
|
PPI BY STRINGS PROTEIN VISUALIZATION BY RASMOL |
12.00-1.00 |
|
LUNCH BREAK |
1.00-1.45 |
|
SEQUENCE ALIGNMENT BY BLAST PRIMER DESINGNING BY PRIMER BLAST |
1.45-2.45 |
|
MULTIPLE SEQUENCE ALIGNMENT AND PHYLOGENETIC ANALYSIS BY CLUSTAL OMEGA AND MEGAX |
2.45-3.45 |
|
GENOME BROWSING-NCBI GENOME BROWSING BY UCSC –CASE STUDY COV 2. |
3.45-4.30 |
|
PHYRE2 1] TEMPLATE INFORMATION 2] DOMAIN ANALYSIS 3] SEQUENCE PROFILE AND MUTATION PROFILE ANALYSIS ALLOSTERIC FREE ENERGY ANALYSIS BY ALLOSIGMA SERVER. |
4.30-5.30 |
DAY 2- DRUG DESIGN- MOLECULAR DOCKING
|
TOPIC |
TIME |
|
THEORY OF MOLECULAR DOCKING CADD AND DRUG SEIGNING PIPELINE INSTALLATION OF SOFTWARES 1]AUTODOCK/MGL TOOLS 2]AUTODOCK VINA 3]PYMOL 4]DISCOVERY STUDIO 5]CHIMERA |
9.30-10.30 |
|
PROTEIN PREPERATION LIGAND MINIMIZTION AND PREPERATION CONVERSION OF FILES IN PYMOL AND ADT |
10.30-11.30 |
|
GRID BOX PREPERATION CONFIGURATION FILE PREPEARTION COMMAND EXECUTION |
11.30-12.30 |
|
ANALYSIS WITH FGENERATION OF PUBLICATION QUALTY IMAGES |
12.30-1.00 |
|
LUNCH BREAK |
1.00-1.45 |
|
MULTILIGAND DOCKING INSTALLATION OF OBABEL |
1.45-2.15 |
|
PREPERATION OF PROTEIN PREPEARTION OF LIGAND GRID BOX CONFIGURATION FILE PREPERATION EXECUTION OF ITERATIVE LOOP COMMAND ANALYSIS |
2.15-3.30 |
|
SIMPLE DOCKING AND MULTILIGAND DOCKING BY PYRX INSTALLATION OF PYRX SITE SPECIFIC DOCKING EXECUTION OF PYRX ANALYSIS WITH FGENERATION OF PUBLICATION QUALTY IMAGES |
3.30-4.30 |
|
DEMO: HEX DOCKING 1] PROTEIN-PROTEIN 2] PROTEIN-CONJUGATE 3] PROTEIN-METAL BASED LIGAND PROTEIN-PEPTIDE DOCKING BY HPEPDOCK |
4.30-5.30 |
DAY 3- MD SIMULATION- PROTEIN-LIGAND COMPLEX SIMULATION [GROMACS (LINUX)]
|
TOPIC |
TIME |
|
THEORY OF MD SIMULATION INSTALLATION OF VIRTUAL BOX |
9.30-10.30 |
|
INSTALLATION OF GROMACS,VMD,QTGRACE |
10.30-11.00 |
|
PREPERATION OF PROTEIN TOPOLOGY PREPERATION OF LIGAND TOPOLOGY |
11.00-12.00 |
|
LUNCH BREAK |
12.30-1.15 |
|
PREPERATION OF COMPLEX.GRO FILE EDITING TOPOLOGY FILE |
1.15--2.15 |
|
SOLVATION IONIZATION MINIMIZATION MAKING INDEX FILES EQUILIBRATION PHASE I EQUILIBRATION PHASE II FINAL PRODUCION MD RUN |
2.15-.4.30 |
|
VMD AND QTGRACE ANALYSIS WITH UNIVERSAL CODES[RMSD,RMSF,SASA,HBONDS,RADIUS OF GYRATION,ENERGY CALCULATION] ANALYSIS WITH FGENERATION OF PUBLICATION QUALTY IMAGE |
4.30-5.30 |
SYSTEM REQUIREMENT
Laptop with i3 and above processor with Windows (7/8/10) system with text editor and Microsoft excel.
For running GROMACS simulation either Linux installation on virtual box can be used for which Windows 10 is mandatory or Linux partitioned on system can be used.
Laptop with i3 and above processor with Windows (7/8/10) system with text editor and Microsoft excel.
For running GROMACS simulation either Linux installation on virtual box can be used for which Windows 10 is mandatory or Linux partitioned on system can be used.
Student & Faculty: Bachelor, Masters, Ph.D., students as well as Faculty and Professors from Microbiology, Biochemistry, Biotechnology, Immunology, Pharmacy, Pharmaceutical Chemistry, Biomedical Technology, Genetics, Bioinformatics, Plant Science and Life Sciences. Professionals: Biotechnology, Bioinformatics and Pharmaceutical scientists from industry, academia, and regulatory agencies. Hands-on exercises will be performed individually using software tools (no prior experience required).
EARLY REGISTRATION DEADLINE IS 15 NOVEMBER 2024
LATE REGISTRATION FEE FOR ALL CATEGORIES IS 2999 MYR= $ 699 (USD).
T & C
- Early registration deadline is 15 October 2024 and late registration fee is 2999 MYR= $ 699 (USD).
- Only 20 seats are available for this program as we need to focus on each participant.
- Bringing the laptop is mandatory to perform the tasks.
- While buying the ticket choose the right category of registration in which you fall. If you register under the wrong category then your registration will be invalid and NO REFUND WILL BE MADE IN THIS CASE. This is your mistake and the company is not responsible for it.
- Once registration is done it is NON-REFUNDABLE/NON TRANSFERABLE.
- Please bring your PHOTO ID of College/ Department/ Institute/ University/ Company for verification.
- Please bring the PRINT OUT of the ticket which you have got after registration. We need a HARD COPY. Without PHOTO ID and PRINT OUT of ticket entry will not be given.
- Once you register we will send you Welcome email 5 days prior to the event. This email will have all detail of files, software, etc.
- You need to follow the instructions in the welcome email and prepare your system accordingly.
- If you do not turn up for any training session on any day then NO CERTIFICATE WILL BE AWARDED TO YOU.
- Timings are to be strictly followed- If you are late for more than 15 minutes from the start then you will not be allowed to enter on that particular day.
- The certificate will be given only when you attend all sessions and of the category in which you have registered.
- BDG Lifesciences (OPC) Pvt. Ltd., India, BBR Pty Ltd. Australia & Proinsilico Malaysia reserves the right of admission in the program.
- Read more points on Terms & Conditions page on the website www.bdglifesciences.com